IL_7AZS_093

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_093 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0788

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7AZS|1|16SB|C|1408
7AZS|1|16SB|A|1409
7AZS|1|16SB|A|1410
7AZS|1|16SB|A|1411
7AZS|1|16SB|C|1412
*
7AZS|1|16SB|G|1428
7AZS|1|16SB|G|1429
7AZS|1|16SB|U|1430
7AZS|1|16SB|A|1431
7AZS|1|16SB|G|1432

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain 23SB

Large subunit ribosomal RNA; LSU rRNA

Chain S11B

30S ribosomal protein S11