IL_7AZS_097

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

7AZS|1|16SB|C|1557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_097 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1144

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7AZS|1|16SB|G|1556
7AZS|1|16SB|C|1557
7AZS|1|16SB|A|1558
*
7AZS|1|16SB|U|2008
7AZS|1|16SB|U|2009
7AZS|1|16SB|C|2010
7AZS|1|16SB|C|2011
7AZS|1|16SB|C|2012

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain ESIB

Transfer RNA; tRNA

Chain MRNB

mRNA

Chain PSIB

Transfer RNA; tRNA

Chain S7B

30S ribosomal protein S7

Chain S9B

30S ribosomal protein S9