IL_7AZS_102

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_102 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.2127

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7AZS|1|16SB|G|1678
7AZS|1|16SB|C|1679
7AZS|1|16SB|U|1680
*
7AZS|1|16SB|G|1833
7AZS|1|16SB|2MG|1834
7AZS|1|16SB|C|1835

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain ASIB

Transfer RNA; tRNA

Chain S14B

30S ribosomal protein S14 type Z

Chain S3B

30S ribosomal protein S3