IL_7AZS_113

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

7AZS|1|16SB|A|2126

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_113 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.1253

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7AZS|1|16SB|C|2027
7AZS|1|16SB|5MC|2028
7AZS|1|16SB|G|2029
*
7AZS|1|16SB|C|2124
7AZS|1|16SB|A|2125
7AZS|1|16SB|A|2126
7AZS|1|16SB|G|2127

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain MRNB

mRNA

Chain PSIB

Transfer RNA; tRNA