IL_7AZS_134

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

7AZS|1|23SA|U|531, 7AZS|1|23SA|G|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_134 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0606

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

7AZS|1|23SA|G|509
7AZS|1|23SA|A|510
7AZS|1|23SA|A|511
7AZS|1|23SA|C|512
*
7AZS|1|23SA|G|523
7AZS|1|23SA|A|524
7AZS|1|23SA|G|525
7AZS|1|23SA|U|526
7AZS|1|23SA|G|527
7AZS|1|23SA|A|528
7AZS|1|23SA|A|529
7AZS|1|23SA|A|530
7AZS|1|23SA|U|531
7AZS|1|23SA|A|532
7AZS|1|23SA|G|533
7AZS|1|23SA|A|534
7AZS|1|23SA|G|535
7AZS|1|23SA|C|536

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L22A

50S ribosomal protein L22

Chain L24A

50S ribosomal protein L24