IL_7AZS_148

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_148 not in the Motif Atlas

Geometric match to IL_4V9F_034

Geometric discrepancy: 0.0615

The information below is about IL_4V9F_034

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

7AZS|1|23SA|G|911
7AZS|1|23SA|A|912
*
7AZS|1|23SA|U|961
7AZS|1|23SA|C|962
7AZS|1|23SA|C|963

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain 5SA

5S ribosomal RNA; 5S rRNA

Chain L16A

50S ribosomal protein L16

Chain L25A

50S ribosomal protein L25