IL_7AZS_153

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

7AZS|1|23SA|C|1043

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_153 not in the Motif Atlas

Geometric match to IL_7RQB_035

Geometric discrepancy: 0.08

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7AZS|1|23SA|C|1042
7AZS|1|23SA|C|1043
7AZS|1|23SA|A|1044
*
7AZS|1|23SA|U|1208
7AZS|1|23SA|G|1209

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L13A

50S ribosomal protein L13

Chain L20A

50S ribosomal protein L20

Chain L21A

50S ribosomal protein L21

Chain L30A

50S ribosomal protein L30