IL_7AZS_164

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7AZS|1|23SA|U|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_164 not in the Motif Atlas

Geometric match to IL_7RQB_047

Geometric discrepancy: 0.1068

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

7AZS|1|23SA|C|1256
7AZS|1|23SA|G|1257
7AZS|1|23SA|A|1258
7AZS|1|23SA|U|1259
7AZS|1|23SA|G|1260
7AZS|1|23SA|A|1261
7AZS|1|23SA|A|1262
7AZS|1|23SA|G|1263
*
7AZS|1|23SA|U|1283
7AZS|1|23SA|G|1284
7AZS|1|23SA|G|1285
7AZS|1|23SA|A|1286
7AZS|1|23SA|G|1287

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L20A

50S ribosomal protein L20