IL_7AZS_180

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

7AZS|1|23SA|C|1593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_180 not in the Motif Atlas

Geometric match to IL_7RQB_063

Geometric discrepancy: 0.1818

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7AZS|1|23SA|G|1575
7AZS|1|23SA|G|1576
7AZS|1|23SA|A|1577
7AZS|1|23SA|A|1578
7AZS|1|23SA|G|1579
*
7AZS|1|23SA|U|1590
7AZS|1|23SA|G|1591
7AZS|1|23SA|A|1592
7AZS|1|23SA|C|1593
7AZS|1|23SA|A|1594
7AZS|1|23SA|A|1595
7AZS|1|23SA|C|1596

Current chains

Chain 23SA

23S rRNA

Nearby chains