IL_7AZS_184

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

7AZS|1|23SA|G|2017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_184 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.0601

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

7AZS|1|23SA|A|1719
7AZS|1|23SA|C|1720
7AZS|1|23SA|U|1721
7AZS|1|23SA|C|1722
7AZS|1|23SA|U|1723
7AZS|1|23SA|G|1724
*
7AZS|1|23SA|C|2015
7AZS|1|23SA|U|2016
7AZS|1|23SA|G|2017
7AZS|1|23SA|U|2018

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L14A

50S ribosomal protein L14

Chain L3A

50S ribosomal protein L3