IL_7AZS_190

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

7AZS|1|23SA|A|1881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_190 not in the Motif Atlas

Geometric match to IL_7RQB_073

Geometric discrepancy: 0.1262

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7AZS|1|23SA|G|1880
7AZS|1|23SA|A|1881
7AZS|1|23SA|A|1882
7AZS|1|23SA|G|1883
*
7AZS|1|23SA|C|1918
7AZS|1|23SA|C|1919

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain 16SA

Small subunit ribosomal RNA; SSU rRNA

Chain ESIA

Transfer RNA; tRNA

Chain L2A

50S ribosomal protein L2