IL_7AZS_191

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_191 not in the Motif Atlas

Geometric match to IL_7RQB_074

Geometric discrepancy: 0.1643

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7AZS|1|23SA|U|1885
7AZS|1|23SA|C|1886
7AZS|1|23SA|A|1887
7AZS|1|23SA|A|1888
7AZS|1|23SA|G|1889
*
7AZS|1|23SA|C|1912
7AZS|1|23SA|G|1913
7AZS|1|23SA|A|1914
7AZS|1|23SA|A|1915
7AZS|1|23SA|G|1916

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain ESIA

Transfer RNA; tRNA

Chain L28A

50S ribosomal protein L28

Chain L2A

50S ribosomal protein L2