IL_7AZS_216

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

7AZS|1|23SA|A|2557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_216 not in the Motif Atlas

Geometric match to IL_5J7L_342

Geometric discrepancy: 0.0616

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7AZS|1|23SA|U|2537
7AZS|1|23SA|G|2538
*
7AZS|1|23SA|C|2555
7AZS|1|23SA|A|2556
7AZS|1|23SA|A|2557
7AZS|1|23SA|G|2558

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L13A

50S ribosomal protein L13