IL_7AZS_220

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_220 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1405

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7AZS|1|23SA|C|2667
7AZS|1|23SA|U|2668
7AZS|1|23SA|A|2669
7AZS|1|23SA|G|2670
7AZS|1|23SA|U|2671
7AZS|1|23SA|A|2672
7AZS|1|23SA|C|2673
*
7AZS|1|23SA|G|2678
7AZS|1|23SA|G|2679
7AZS|1|23SA|A|2680
7AZS|1|23SA|C|2681
7AZS|1|23SA|C|2682
7AZS|1|23SA|G|2683

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L6A

50S ribosomal protein L6