IL_7AZS_238

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

7AZS|1|23SB|G|377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_238 not in the Motif Atlas

Geometric match to IL_7RQB_012

Geometric discrepancy: 0.1647

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7AZS|1|23SB|C|313
7AZS|1|23SB|A|314
7AZS|1|23SB|G|315
*
7AZS|1|23SB|U|375
7AZS|1|23SB|G|376
7AZS|1|23SB|G|377
7AZS|1|23SB|G|378

Current chains

Chain 23SB

23S rRNA

Nearby chains