IL_7AZS_253
3D structure
- PDB id
- 7AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AZS_253 not in the Motif Atlas
- Geometric match to IL_7RQB_027
- Geometric discrepancy: 0.0933
- The information below is about IL_7RQB_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.1
- Basepair signature
- cWW-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7AZS|1|23SB|U|907
7AZS|1|23SB|G|908
7AZS|1|23SB|U|909
7AZS|1|23SB|A|910
7AZS|1|23SB|G|911
*
7AZS|1|23SB|C|963
7AZS|1|23SB|G|964
7AZS|1|23SB|A|965
7AZS|1|23SB|A|966
7AZS|1|23SB|G|967
Current chains
- Chain 23SB
- 23S rRNA
Nearby chains
- Chain 5SB
- 5S ribosomal RNA; 5S rRNA
- Chain L16B
- 50S ribosomal protein L16
- Chain L27B
- 50S ribosomal protein L27
- Chain L30B
- 50S ribosomal protein L30
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