IL_7AZS_299
3D structure
- PDB id
- 7AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 7AZS|1|23SB|A|1963, 7AZS|1|23SB|U|1969, 7AZS|1|23SB|U|1988
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AZS_299 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1151
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
7AZS|1|23SB|C|1959
7AZS|1|23SB|G|1960
7AZS|1|23SB|A|1961
7AZS|1|23SB|A|1962
7AZS|1|23SB|A|1963
7AZS|1|23SB|5MU|1964
7AZS|1|23SB|U|1965
7AZS|1|23SB|C|1966
7AZS|1|23SB|5MC|1967
7AZS|1|23SB|U|1968
7AZS|1|23SB|U|1969
7AZS|1|23SB|G|1970
*
7AZS|1|23SB|C|1986
7AZS|1|23SB|5MC|1987
7AZS|1|23SB|U|1988
7AZS|1|23SB|G|1989
Current chains
- Chain 23SB
- 23S rRNA
Nearby chains
- Chain 16SB
- Small subunit ribosomal RNA; SSU rRNA
- Chain ASIB
- Transfer RNA; tRNA
- Chain L2B
- 50S ribosomal protein L2
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