IL_7AZS_306

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_306 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2812

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7AZS|1|23SB|C|2132
7AZS|1|23SB|C|2133
7AZS|1|23SB|U|2134
7AZS|1|23SB|G|2135
*
7AZS|1|23SB|C|2204
7AZS|1|23SB|U|2205
7AZS|1|23SB|G|2206
7AZS|1|23SB|G|2207

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain ESIB

Transfer RNA; tRNA