IL_7AZS_307
3D structure
- PDB id
- 7AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCGUAGGAUAGG*CCC
- Length
- 15 nucleotides
- Bulged bases
- 7AZS|1|23SB|C|2136, 7AZS|1|23SB|G|2137, 7AZS|1|23SB|U|2138, 7AZS|1|23SB|U|2143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AZS_307 not in the Motif Atlas
- Homologous match to IL_3U4M_001
- Geometric discrepancy: 0.555
- The information below is about IL_3U4M_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 78
Unit IDs
7AZS|1|23SB|G|2135
7AZS|1|23SB|C|2136
7AZS|1|23SB|G|2137
7AZS|1|23SB|U|2138
7AZS|1|23SB|A|2139
7AZS|1|23SB|G|2140
7AZS|1|23SB|G|2141
7AZS|1|23SB|A|2142
7AZS|1|23SB|U|2143
7AZS|1|23SB|A|2144
7AZS|1|23SB|G|2145
7AZS|1|23SB|G|2146
*
7AZS|1|23SB|C|2202
7AZS|1|23SB|C|2203
7AZS|1|23SB|C|2204
Current chains
- Chain 23SB
- 23S rRNA
Nearby chains
- Chain 16SA
- Small subunit ribosomal RNA; SSU rRNA
- Chain ESIB
- Transfer RNA; tRNA
Coloring options: