IL_7AZS_336
3D structure
- PDB id
- 7AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AZS_336 not in the Motif Atlas
- Geometric match to IL_7RQB_114
- Geometric discrepancy: 0.0943
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
7AZS|1|5SA|U|36
7AZS|1|5SA|U|37
7AZS|1|5SA|C|38
7AZS|1|5SA|C|39
7AZS|1|5SA|C|40
*
7AZS|1|5SA|G|46
7AZS|1|5SA|A|47
7AZS|1|5SA|A|48
7AZS|1|5SA|C|49
7AZS|1|5SA|A|50
Current chains
- Chain 5SA
- 5S rRNA
Nearby chains
- Chain 23SA
- Large subunit ribosomal RNA; LSU rRNA
- Chain L18A
- 50S ribosomal protein L18
- Chain L31A
- 50S ribosomal protein L31
- Chain L5A
- 50S ribosomal protein L5
Coloring options: