IL_7AZS_343

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGGC*GUCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_343 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.2265

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7AZS|1|16SA|C|713
7AZS|1|16SA|G|714
7AZS|1|16SA|G|715
7AZS|1|16SA|G|716
7AZS|1|16SA|C|717
*
7AZS|1|16SA|G|737
7AZS|1|16SA|U|738
7AZS|1|16SA|C|739
7AZS|1|16SA|A|740
7AZS|1|16SA|G|741

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S20A

30S ribosomal protein S20