IL_7AZS_376

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGAGC*GCGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_376 not in the Motif Atlas

Geometric match to IL_8CRE_028

Geometric discrepancy: 0.3353

The information below is about IL_8CRE_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7AZS|1|23SB|C|2481
7AZS|1|23SB|C|2482
7AZS|1|23SB|G|2483
7AZS|1|23SB|A|2484
7AZS|1|23SB|G|2485
7AZS|1|23SB|C|2486
*
7AZS|1|23SB|G|2494
7AZS|1|23SB|C|2495
7AZS|1|23SB|G|2496
7AZS|1|23SB|G|2497
7AZS|1|23SB|C|2498
7AZS|1|23SB|G|2499

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain ASIB

Transfer RNA; tRNA

Chain L16B

50S ribosomal protein L16