IL_7AZY_050

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

GACACCACAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

7AZY|1|E|C|1196, 7AZY|1|E|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZY_050 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.0823

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7AZY|1|E|G|1194
7AZY|1|E|A|1195
7AZY|1|E|C|1196
7AZY|1|E|A|1197
7AZY|1|E|C|1198
7AZY|1|E|C|1199
7AZY|1|E|A|1200
7AZY|1|E|C|1201
7AZY|1|E|A|1202
7AZY|1|E|A|1203
7AZY|1|E|A|1204
7AZY|1|E|A|1205
*
7AZY|1|E|U|1299
7AZY|1|E|G|1300
7AZY|1|E|A|1301
7AZY|1|E|A|1302
7AZY|1|E|A|1303
7AZY|1|E|A|1304
7AZY|1|E|U|1305
7AZY|1|E|G|1306
7AZY|1|E|G|1307
7AZY|1|E|A|1308
7AZY|1|E|U|1309
7AZY|1|E|G|1310
7AZY|1|E|G|1311
7AZY|1|E|C|1312
7AZY|1|E|G|1313
7AZY|1|E|C|1314

Current chains

Chain E

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L7-A

Chain F

5S ribosomal RNA; 5S rRNA

Chain P

Ubiquitin-60S ribosomal protein L40

Chain V

60S ribosomal protein L16-A

Chain l

60S ribosomal protein L3

Chain o

60S ribosomal protein L10

Chain v

60S ribosomal protein L33-A