IL_7AZY_089

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7AZY|1|E|A|2281, 7AZY|1|E|C|2287, 7AZY|1|E|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZY_089 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0865

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7AZY|1|E|C|2277
7AZY|1|E|C|2278
7AZY|1|E|A|2279
7AZY|1|E|A|2280
7AZY|1|E|A|2281
7AZY|1|E|U|2282
7AZY|1|E|G|2283
7AZY|1|E|C|2284
7AZY|1|E|C|2285
7AZY|1|E|U|2286
7AZY|1|E|C|2287
7AZY|1|E|G|2288
*
7AZY|1|E|C|2304
7AZY|1|E|G|2305
7AZY|1|E|C|2306
7AZY|1|E|G|2307

Current chains

Chain E

25S ribosomal RNA

Nearby chains