IL_7B5K_033
3D structure
- PDB id
- 7B5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCCCAAAG*CA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7B5K_033 not in the Motif Atlas
- Homologous match to IL_4WF9_037
- Geometric discrepancy: 0.0791
- The information below is about IL_4WF9_037
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
7B5K|1|A|U|1004
7B5K|1|A|C|1005
7B5K|1|A|C|1006
7B5K|1|A|C|1007
7B5K|1|A|A|1008
7B5K|1|A|A|1009
7B5K|1|A|A|1010
7B5K|1|A|G|1011
*
7B5K|1|A|C|1150
7B5K|1|A|A|1151
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain J
- 50S ribosomal protein L13
- Chain Q
- 50S ribosomal protein L20
Coloring options: