IL_7B5K_039
3D structure
- PDB id
- 7B5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 7B5K|1|A|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7B5K_039 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.2293
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
7B5K|1|A|C|1043
7B5K|1|A|C|1044
7B5K|1|A|C|1045
7B5K|1|A|A|1046
7B5K|1|A|G|1047
7B5K|1|A|A|1048
7B5K|1|A|C|1049
7B5K|1|A|A|1050
7B5K|1|A|G|1051
*
7B5K|1|A|U|1108
7B5K|1|A|C|1109
7B5K|1|A|G|1110
7B5K|1|A|A|1111
7B5K|1|A|G|1112
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
Coloring options: