3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CCUUG*UAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B5K_083 not in the Motif Atlas
Geometric match to IL_5TBW_121
Geometric discrepancy: 0.3587
The information below is about IL_5TBW_121
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_05145.3
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
13

Unit IDs

7B5K|1|A|C|2103
7B5K|1|A|C|2104
7B5K|1|A|U|2105
7B5K|1|A|U|2106
7B5K|1|A|G|2107
*
7B5K|1|A|U|2182
7B5K|1|A|A|2183
7B5K|1|A|A|2184
7B5K|1|A|U|2185
7B5K|1|A|G|2186

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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