IL_7B5K_140

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B5K_140 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1117

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7B5K|1|a|G|450
7B5K|1|a|A|451
7B5K|1|a|A|452
7B5K|1|a|G|453
7B5K|1|a|G|454
7B5K|1|a|G|455
*
7B5K|1|a|C|477
7B5K|1|a|A|478
7B5K|1|a|U|479
7B5K|1|a|U|480
7B5K|1|a|G|481
7B5K|1|a|A|482
7B5K|1|a|C|483

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16