3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UAGAG*UGGA
Length
9 nucleotides
Bulged bases
7B5K|1|a|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B5K_150 not in the Motif Atlas
Homologous match to IL_5J7L_033
Geometric discrepancy: 0.0746
The information below is about IL_5J7L_033
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

7B5K|1|a|U|662
7B5K|1|a|A|663
7B5K|1|a|G|664
7B5K|1|a|A|665
7B5K|1|a|G|666
*
7B5K|1|a|U|740
7B5K|1|a|G|741
7B5K|1|a|G|742
7B5K|1|a|A|743

Current chains

Chain a
16S rRNA

Nearby chains

Chain f
30S ribosomal protein S6
Chain o
30S ribosomal protein S15
Chain r
30S ribosomal protein S18

Coloring options:


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