IL_7B5K_158

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

7B5K|1|a|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B5K_158 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.0851

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7B5K|1|a|G|933
7B5K|1|a|C|934
7B5K|1|a|A|935
*
7B5K|1|a|U|1380
7B5K|1|a|U|1381
7B5K|1|a|C|1382
7B5K|1|a|C|1383
7B5K|1|a|C|1384

Current chains

Chain a

16S rRNA

Nearby chains

Chain 9

Transfer RNA; tRNA

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9

Chain x

Transfer RNA; tRNA