3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UACAAAG*CAUAAAG
Length
14 nucleotides
Bulged bases
7B5K|1|a|U|1286
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B5K_170 not in the Motif Atlas
Homologous match to IL_5J7L_054
Geometric discrepancy: 0.1226
The information below is about IL_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

7B5K|1|a|U|1247
7B5K|1|a|A|1248
7B5K|1|a|C|1249
7B5K|1|a|A|1250
7B5K|1|a|A|1251
7B5K|1|a|A|1252
7B5K|1|a|G|1253
*
7B5K|1|a|C|1284
7B5K|1|a|A|1285
7B5K|1|a|U|1286
7B5K|1|a|A|1287
7B5K|1|a|A|1288
7B5K|1|a|A|1289
7B5K|1|a|G|1290

Current chains

Chain a
16S rRNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10

Coloring options:


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