3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUAG*CGC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B5K_180 not in the Motif Atlas
Geometric match to IL_4PKD_001
Geometric discrepancy: 0.2509
The information below is about IL_4PKD_001
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

7B5K|1|a|G|1439
7B5K|1|a|U|1440
7B5K|1|a|A|1441
7B5K|1|a|G|1442
*
7B5K|1|a|C|1460
7B5K|1|a|G|1461
7B5K|1|a|C|1462

Current chains

Chain a
16S rRNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain P
50S ribosomal protein L19
Chain t
30S ribosomal protein S20

Coloring options:


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