IL_7B5K_184

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B5K_184 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0881

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7B5K|1|A|U|1851
7B5K|1|A|U|1852
7B5K|1|A|A|1853
7B5K|1|A|A|1854
7B5K|1|A|U|1855
7B5K|1|A|U|1856
7B5K|1|A|G|1857
7B5K|1|A|A|1858
7B5K|1|A|U|1859
7B5K|1|A|G|1860
*
7B5K|1|A|U|1882
7B5K|1|A|U|1883
7B5K|1|A|G|1884
7B5K|1|A|A|1885
7B5K|1|A|U|1886
7B5K|1|A|C|1887
7B5K|1|A|G|1888
7B5K|1|A|A|1889
7B5K|1|A|A|1890
7B5K|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

Transfer RNA; tRNA