IL_7B7D_011

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

7B7D|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_011 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.2097

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

7B7D|1|2|U|144
7B7D|1|2|A|145
7B7D|1|2|U|146
7B7D|1|2|A|147
7B7D|1|2|A|148
7B7D|1|2|C|149
*
7B7D|1|2|G|165
7B7D|1|2|C|166
7B7D|1|2|U|167
7B7D|1|2|A|168
7B7D|1|2|A|169
7B7D|1|2|U|170
7B7D|1|2|A|171

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LS

60S ribosomal protein L24-A

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A