IL_7B7D_018

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

7B7D|1|2|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_018 not in the Motif Atlas

Geometric match to IL_5FQ5_002

Geometric discrepancy: 0.3056

The information below is about IL_5FQ5_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7B7D|1|2|C|275
7B7D|1|2|C|276
*
7B7D|1|2|G|279
7B7D|1|2|U|280
7B7D|1|2|G|281

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LS

60S ribosomal protein L24-A

Chain T

40S ribosomal protein S6-A