3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
AC*GAAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B7D_038 not in the Motif Atlas
Homologous match to IL_4V88_423
Geometric discrepancy: 0.2202
The information below is about IL_4V88_423
Detailed Annotation
Major groove minor groove platform; mini C-loop
Broad Annotation
No text annotation
Motif group
IL_68140.1
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
19

Unit IDs

7B7D|1|2|A|746
7B7D|1|2|C|747
*
7B7D|1|2|G|802
7B7D|1|2|A|803
7B7D|1|2|A|804
7B7D|1|2|U|805

Current chains

Chain 2
18S rRNA

Nearby chains

Chain U
40S ribosomal protein S7-A
Chain X
40S ribosomal protein S11-A
Chain b
40S ribosomal protein S22-A
Chain c
40S ribosomal protein S23-A

Coloring options:


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