3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUG*UUAUC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B7D_072 not in the Motif Atlas
Homologous match to IL_8C3A_464
Geometric discrepancy: 0.477
The information below is about IL_8C3A_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

7B7D|1|2|G|1352
7B7D|1|2|U|1353
7B7D|1|2|G|1354
*
7B7D|1|2|U|1369
7B7D|1|2|U|1370
7B7D|1|2|A|1371
7B7D|1|2|U|1372
7B7D|1|2|C|1373

Current chains

Chain 2
18S rRNA

Nearby chains

Chain F
40S ribosomal protein S16-A
Chain I
40S ribosomal protein S19-A
Chain J
40S ribosomal protein S20

Coloring options:


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