IL_7B7D_089

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_089 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2323

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7B7D|1|2|A|1678
7B7D|1|2|G|1679
7B7D|1|2|G|1680
7B7D|1|2|A|1681
7B7D|1|2|U|1682
*
7B7D|1|2|A|1719
7B7D|1|2|G|1720
7B7D|1|2|A|1721
7B7D|1|2|A|1722
7B7D|1|2|U|1723

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LS

60S ribosomal protein L24-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A