3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAAAG*CUAGUAGC
Length
13 nucleotides
Bulged bases
7B7D|1|LA|A|933, 7B7D|1|LA|G|937
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B7D_117 not in the Motif Atlas
Homologous match to IL_8C3A_030
Geometric discrepancy: 0.0948
The information below is about IL_8C3A_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_17470.7
Basepair signature
cWW-tWW-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

7B7D|1|LA|G|805
7B7D|1|LA|A|806
7B7D|1|LA|A|807
7B7D|1|LA|A|808
7B7D|1|LA|G|809
*
7B7D|1|LA|C|931
7B7D|1|LA|U|932
7B7D|1|LA|A|933
7B7D|1|LA|G|934
7B7D|1|LA|U|935
7B7D|1|LA|A|936
7B7D|1|LA|G|937
7B7D|1|LA|C|938

Current chains

Chain LA
25S rRNA

Nearby chains

Chain LF
60S ribosomal protein L4-A
Chain LN
60S ribosomal protein L13-A
Chain LP
60S ribosomal protein L15-A
Chain LW
60S ribosomal protein L28
Chain Lf
60S ribosomal protein L37-A

Coloring options:


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