IL_7B7D_124

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCA*UAGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_124 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2364

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7B7D|1|LA|G|968
7B7D|1|LA|C|969
7B7D|1|LA|A|970
*
7B7D|1|LA|U|1111
7B7D|1|LA|A|1112
7B7D|1|LA|G|1113
7B7D|1|LA|U|1114

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L13-A

Chain LW

60S ribosomal protein L28

Chain LX

60S ribosomal protein L29

Chain Lm

60S ribosomal protein L18-A

Chain Lp

60S ribosomal protein L21-A