IL_7B7D_141
3D structure
- PDB id
- 7B7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 7B7D|1|LA|C|1196, 7B7D|1|LA|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7B7D_141 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0874
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7B7D|1|LA|G|1194
7B7D|1|LA|A|1195
7B7D|1|LA|C|1196
7B7D|1|LA|A|1197
7B7D|1|LA|C|1198
7B7D|1|LA|C|1199
7B7D|1|LA|A|1200
7B7D|1|LA|C|1201
7B7D|1|LA|A|1202
7B7D|1|LA|A|1203
7B7D|1|LA|A|1204
7B7D|1|LA|A|1205
*
7B7D|1|LA|U|1299
7B7D|1|LA|G|1300
7B7D|1|LA|A|1301
7B7D|1|LA|A|1302
7B7D|1|LA|A|1303
7B7D|1|LA|A|1304
7B7D|1|LA|U|1305
7B7D|1|LA|G|1306
7B7D|1|LA|G|1307
7B7D|1|LA|A|1308
7B7D|1|LA|U|1309
7B7D|1|LA|G|1310
7B7D|1|LA|G|1311
7B7D|1|LA|C|1312
7B7D|1|LA|G|1313
7B7D|1|LA|C|1314
Current chains
- Chain LA
- 25S rRNA
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LE
- 60S ribosomal protein L3
- Chain LI
- 60S ribosomal protein L7-A
- Chain LL
- 60S ribosomal protein L10
- Chain LQ
- 60S ribosomal protein L16-A
- Chain Lb
- 60S ribosomal protein L33-A
- Chain Li
- Ubiquitin-60S ribosomal protein L40
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