IL_7B7D_169

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

7B7D|1|LA|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_169 not in the Motif Atlas

Geometric match to IL_4WF9_065

Geometric discrepancy: 0.1231

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

7B7D|1|LA|A|1901
7B7D|1|LA|G|1902
7B7D|1|LA|U|1903
7B7D|1|LA|C|1904
7B7D|1|LA|G|1905
7B7D|1|LA|G|1906
*
7B7D|1|LA|C|2333
7B7D|1|LA|U|2334
7B7D|1|LA|G|2335
7B7D|1|LA|U|2336

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain Lr

60S ribosomal protein L23-A