IL_7B7D_170

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7B7D|1|LA|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_170 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1191

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7B7D|1|LA|C|1918
7B7D|1|LA|G|1919
7B7D|1|LA|U|1920
7B7D|1|LA|A|1921
7B7D|1|LA|A|1922
7B7D|1|LA|C|1923
*
7B7D|1|LA|G|1928
7B7D|1|LA|G|1929
7B7D|1|LA|A|1930
7B7D|1|LA|U|1931
7B7D|1|LA|A|1932
7B7D|1|LA|A|1933
7B7D|1|LA|G|1934

Current chains

Chain LA

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Lj

60S ribosomal protein L41-B

Chain Ll

60S ribosomal protein L43-A