IL_7B7D_174

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7B7D|1|LA|U|2159, 7B7D|1|LA|U|2175, 7B7D|1|LA|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_174 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0846

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7B7D|1|LA|C|2156
7B7D|1|LA|G|2157
7B7D|1|LA|A|2158
7B7D|1|LA|U|2159
7B7D|1|LA|G|2160
7B7D|1|LA|G|2161
*
7B7D|1|LA|U|2173
7B7D|1|LA|G|2174
7B7D|1|LA|U|2175
7B7D|1|LA|U|2176
7B7D|1|LA|G|2177
7B7D|1|LA|A|2178
7B7D|1|LA|C|2179
7B7D|1|LA|G|2180

Current chains

Chain LA

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain LD

60S ribosomal protein L2-A

Chain Ll

60S ribosomal protein L43-A