IL_7B7D_180
3D structure
- PDB id
- 7B7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 7B7D|1|LA|A|2281, 7B7D|1|LA|C|2287, 7B7D|1|LA|C|2306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7B7D_180 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.0989
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7B7D|1|LA|C|2277
7B7D|1|LA|C|2278
7B7D|1|LA|A|2279
7B7D|1|LA|A|2280
7B7D|1|LA|A|2281
7B7D|1|LA|U|2282
7B7D|1|LA|G|2283
7B7D|1|LA|C|2284
7B7D|1|LA|C|2285
7B7D|1|LA|U|2286
7B7D|1|LA|C|2287
7B7D|1|LA|G|2288
*
7B7D|1|LA|C|2304
7B7D|1|LA|G|2305
7B7D|1|LA|C|2306
7B7D|1|LA|G|2307
Current chains
- Chain LA
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Lj
- 60S ribosomal protein L41-B
- Chain Sm
- Transfer RNA; tRNA
Coloring options: