IL_7B7D_186

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_186 not in the Motif Atlas

Geometric match to IL_8C3A_481

Geometric discrepancy: 0.3809

The information below is about IL_8C3A_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7B7D|1|LA|G|2440
7B7D|1|LA|A|2441
7B7D|1|LA|G|2442
7B7D|1|LA|A|2443
*
7B7D|1|LA|U|2504
7B7D|1|LA|U|2505
7B7D|1|LA|U|2506
7B7D|1|LA|C|2507

Current chains

Chain LA

25S rRNA

Nearby chains

Chain Le

60S ribosomal protein L36-A

Chain Q

40S ribosomal protein S1-A