IL_7B7D_202

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7B7D|1|LA|G|2945, 7B7D|1|LA|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_202 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1035

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7B7D|1|LA|C|2879
7B7D|1|LA|U|2880
7B7D|1|LA|C|2881
*
7B7D|1|LA|G|2943
7B7D|1|LA|U|2944
7B7D|1|LA|G|2945
7B7D|1|LA|A|2946
7B7D|1|LA|G|2947

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain Lr

60S ribosomal protein L23-A