IL_7B7D_212

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

7B7D|1|LA|U|3056, 7B7D|1|LA|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_212 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.0932

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7B7D|1|LA|U|3054
7B7D|1|LA|U|3055
7B7D|1|LA|U|3056
7B7D|1|LA|U|3057
7B7D|1|LA|U|3058
7B7D|1|LA|G|3059
*
7B7D|1|LA|C|3084
7B7D|1|LA|G|3085
7B7D|1|LA|A|3086
7B7D|1|LA|A|3087
7B7D|1|LA|G|3088

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LS

60S ribosomal protein L24-A

Chain LZ

60S ribosomal protein L31-A