3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UACGAAUAAG*CGCUGAA
Length
17 nucleotides
Bulged bases
7B7D|1|LA|A|3180, 7B7D|1|LA|A|3186, 7B7D|1|LA|U|3207, 7B7D|1|LA|A|3209
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7B7D_218 not in the Motif Atlas
Geometric match to IL_5TBW_124
Geometric discrepancy: 0.0953
The information below is about IL_5TBW_124
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_15174.1
Basepair signature
cWW-L-R-L-R-L-cWW-cSS-cWW-L
Number of instances in this motif group
2

Unit IDs

7B7D|1|LA|U|3179
7B7D|1|LA|A|3180
7B7D|1|LA|C|3181
7B7D|1|LA|G|3182
7B7D|1|LA|A|3183
7B7D|1|LA|A|3184
7B7D|1|LA|U|3185
7B7D|1|LA|A|3186
7B7D|1|LA|A|3187
7B7D|1|LA|G|3188
*
7B7D|1|LA|C|3204
7B7D|1|LA|G|3205
7B7D|1|LA|C|3206
7B7D|1|LA|U|3207
7B7D|1|LA|G|3208
7B7D|1|LA|A|3209
7B7D|1|LA|A|3210

Current chains

Chain LA
25S rRNA

Nearby chains

Chain LH
60S ribosomal protein L6-B
Chain LK
60S ribosomal protein L9-A
Chain LO
60S ribosomal protein L14-A
Chain LQ
60S ribosomal protein L16-A
Chain Lb
60S ribosomal protein L33-A
Chain Lo
60S ribosomal protein L20-A

Coloring options:


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