IL_7B7D_230

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

7B7D|1|LA|U|3354, 7B7D|1|LA|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_230 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.1626

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7B7D|1|LA|C|3349
7B7D|1|LA|C|3350
*
7B7D|1|LA|G|3353
7B7D|1|LA|U|3354
7B7D|1|LA|U|3355
7B7D|1|LA|G|3356

Current chains

Chain LA

25S rRNA

Nearby chains

Chain V

40S ribosomal protein S8-A